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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggacttgcaactccgtgtttaccttgaaaaatgttttactgggtgagaagatagttgctaaccttaattggtttacttatgtcgtttgctcaacttattgcagGAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGCACCATGGCAATGGCACGGGAG

Basic information

species Physcomitrella patens
transcript PP1S211_59V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162175943|gb|FC351621.1|FC351621
EST:     AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAG                         GAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC
genomic: AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAGgtatgggact ... cttattgcagGAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC
EST: gi|208362039|gb|DC950488.1|DC950488
EST:     AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAG                         GAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC
genomic: AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAGgtatgggact ... cttattgcagGAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC
EST: gi|37839667|gb|BJ597675.1|BJ597675
EST:     AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAG                         GAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC
genomic: AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAGgtatgggact ... cttattgcagGAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC
EST: gi|37839827|gb|BJ597835.1|BJ597835
EST:     AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAG                         GAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC
genomic: AGATTATGGTGGACGGTGAGAAGGAGCCCATCTACGGTGCCACTCTTGAGgtatgggact ... cttattgcagGAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatagttgctaaccttaattggtttacttatgtcgtttgctcaacttattgcagGAACTTGGCAAGTACAAGGCAACTACGACACTGCCATTCAACGCATTCGGCACCATGGCAATGGCACGGGAG
                       tttacttat  TA-rich tract