1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cacttaatgaatactgacctacttgcgtttgtcatgggatgtgttaatagtaacataatgtaattctcatctctttggaatgttgaactgggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGTCAACTTGGTTACGGAGCTATGGTTTTTGTTCGTCAAGGCATTGTTATT
species | Physcomitrella patens |
transcript | PP1S209_135V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAG ATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGEST: gi|162185219|gb|FC361729.1|FC361729
genomic: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAGgtatgtcctt ... ggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACG
EST: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAG ATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGEST: gi|67571085|gb|BJ943909.1|BJ943909
genomic: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAGgtatgtcctt ... ggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACG
EST: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAG ATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGEST: gi|162194102|gb|FC370277.1|FC370277
genomic: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAGgtatgtcctt ... ggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACG
EST: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAG ATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGEST: gi|162198834|gb|FC374317.1|FC374317
genomic: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAGgtatgtcctt ... ggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACG
EST: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAG ATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGEST: gi|162244831|gb|FC420183.1|FC420183
genomic: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAGgtatgtcctt ... ggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACG
EST: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAG ATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACG
genomic: TTCCTACGATTTGATCACGTTCGCATACCACGAGAAAATATGCTTATGAGgtatgtcctt ... ggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACG
aatagtaacataatgtaattctcatctctttggaatgttgaactgggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGTCAACTTGGTTACGGAGCTATGGTTTTTGTTCGTCAAGGCATTGTTATT
tagtaac putative branch site (score: 9)
taacataatgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacttaatgaatactgacctacttgcgtttgtcatgggatgtgttaatagtaacataatgtaattctcatctctttggaatgttgaactgggttggtcagATTAGCGACTGTTACAAAAGACGGGAAATACGTGCGATCGAACAAGCCACGTCAACTTGGTTACGGAGCTATGGTTTTTGTTCGTCAAGGCATTGTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa