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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttagttcctcctttatacccgagaactcttaagatacaaggtgctgtaatgtcggtccttcgactctcgcttaacctcttttgagctagtcagtgaatctaaaataatattctgtgaaacaatttttggctttttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCAGAG

Basic information

species Physcomitrella patens
transcript PP1S208_169V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67568788|gb|BJ941612.1|BJ941612
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|18338596|gb|BJ170620.1|BJ170620
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|67574172|gb|BJ946996.1|BJ946996
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|162253081|gb|FC428913.1|FC428913
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|67697570|gb|BJ957803.1|BJ957803
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|162253082|gb|FC428914.1|FC428914
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|208394485|gb|DC953524.1|DC953524
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|67691983|gb|BJ952216.1|BJ952216
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|162251498|gb|FC425566.1|FC425566
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
EST: gi|162251499|gb|FC425567.1|FC425567
EST:     GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTT                         GTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA
genomic: GCCAAAGGATCCCTAATTCAAGTTTCTGGGGTGGTGAATCAGAACTGCTTgtaagtctta ... ttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagtgaatctaaaataatattctgtgaaacaatttttggctttttatctacagGTATTGTCAAGAATGTGTTCGCAACCTGTAATTGTGTACATTCCCGAGTCAGAG
        atctaaa  putative branch site (score: 3)
                                         ctttttatct  putative PPT
           taaaataatattctgt  TA-rich tract