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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caacattctactagtcaatagcttattcgtggacaagtttcagtggatttcttgttttagcagcaatttgcaagttattgattgctattggctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG

Basic information

species Physcomitrella patens
transcript PP1S201_89V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194223|gb|FC371048.1|FC371048
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162193225|gb|FC372013.1|FC372013
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|67692896|gb|BJ953129.1|BJ953129
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|208380712|gb|DC919428.1|DC919428
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162226177|gb|FC401637.1|FC401637
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162277902|gb|FC453825.1|FC453825
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162186064|gb|FC361268.1|FC361268
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162221094|gb|FC397735.1|FC397735
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162182566|gb|FC357541.1|FC357541
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162160823|gb|FC336722.1|FC336722
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162192157|gb|FC368306.1|FC368306
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|37825167|gb|BJ583233.1|BJ583233
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162220365|gb|FC395733.1|FC395733
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162185812|gb|FC362368.1|FC362368
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162216433|gb|FC393266.1|FC393266
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162194224|gb|FC371049.1|FC371049
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|208370717|gb|DC948254.1|DC948254
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|67720443|gb|BJ970702.1|BJ970702
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162252117|gb|FC428356.1|FC428356
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|208373189|gb|DC945143.1|DC945143
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162239762|gb|FC417161.1|FC417161
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162184291|gb|FC359700.1|FC359700
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|208362900|gb|DC957911.1|DC957911
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162192703|gb|FC370100.1|FC370100
EST:     CGATCAAAGCTATTGAAACCGGATGGGTGCATCCATCAATTAATCAATTC                         AATCCCTGAG-AGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCA
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCC-TGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCA
EST: gi|37835911|gb|BJ593923.1|BJ593923
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|67724232|gb|BJ974491.1|BJ974491
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162185811|gb|FC362367.1|FC362367
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162221824|gb|FC398391.1|FC398391
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162270068|gb|FC446768.1|FC446768
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162192156|gb|FC368305.1|FC368305
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|208363288|gb|DC954418.1|DC954418
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|67722717|gb|BJ972976.1|BJ972976
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162160984|gb|FC337008.1|FC337008
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162160945|gb|FC337489.1|FC337489
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162267460|gb|FC444211.1|FC444211
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162277397|gb|FC453203.1|FC453203
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162163020|gb|FC338410.1|FC338410
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162190912|gb|FC368110.1|FC368110
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162162751|gb|FC337805.1|FC337805
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162190722|gb|FC367608.1|FC367608
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162182298|gb|FC357169.1|FC357169
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162216432|gb|FC393265.1|FC393265
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162155215|gb|FC331698.1|FC331698
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162192702|gb|FC370099.1|FC370099
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
EST: gi|162190913|gb|FC368111.1|FC368111
EST:     CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTC                         AATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG
genomic: CGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 19

CATGATTGGGCACTGCCTTGGAGCTGCTGGAGGTTTAGAGGCGATTGCTACGATCAAAGCTATTGAAACCGGATGGTTGCATCCATCAATTAATCAATTCgtaagtgcgg ... gctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttcttgttttagcagcaatttgcaagttattgattgctattggctgttgcagAATCCTGAGGAGTCGGTGACATTTGACACTGTGCCCAATGTCAAAAAGCAGCATGAAGTAAATGTTG
                              tattgat  putative branch site (score: 19)
                             ttattgatt  TA-rich tract