1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtaactttacttcagggcgattaactctggctgcccatggttgctgggacccattagtcgacattccaacatctgctaacactttaggctcctgatacgcattttcatcaccaaggtaatgcatggtctcgtttctgaattctgttggttgtatgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGAGCTACGGAGCTGAG
species | Physcomitrella patens |
transcript | PP1S201_84V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|208378857|gb|DC927559.1|DC927559
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|208372750|gb|DC952637.1|DC952637
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|208366150|gb|DC955251.1|DC955251
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|208367476|gb|DC954936.1|DC954936
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: AAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|208365046|gb|DC947310.1|DC947310
genomic: AAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|208368383|gb|DC955552.1|DC955552
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|67726533|gb|BJ976792.1|BJ976792
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGEST: gi|37840758|gb|BJ598766.1|BJ598766
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
EST: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAG GAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
genomic: TTGAGAAGGAGGCTAAAAAAGAAGTTGAAGATGCTCTTGCTAAGGCCAAGgtttgtaact ... tgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAG
caccaaggtaatgcatggtctcgtttctgaattctgttggttgtatgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGAGCTACGGAGCTGAG
tgtttttc CT-rich tract
tatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaactttacttcagggcgattaactctggctgcccatggttgctgggacccattagtcgacattccaacatctgctaacactttaggctcctgatacgcattttcatcaccaaggtaatgcatggtctcgtttctgaattctgttggttgtatgtttttcagGAGAGTCCCTCGCCCGATGCGCCTGAACTATTCTCGCACATCTATCGGAAGAGCTACGGAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA