1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagtttgaatgaacacaaaattatgttaactagtcaaataattgtaaaaaagtgcttaacgacggatactctcttttcttcacgaatgtctgatggattaggttcactcctcatttctctgcatcactgtgtggcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTATGATGTTTTTGACCCAGCTGAGTATGGACCTCAACCAAGCCAACGG
species | Physcomitrella patens |
transcript | PP1S19_322V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAG GCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTATEST: gi|37828706|gb|BJ586718.1|BJ586718
genomic: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAGgtcagtttga ... gcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTAT
EST: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAG GCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTATEST: gi|37833465|gb|BJ591477.1|BJ591477
genomic: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAGgtcagtttga ... gcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTAT
EST: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAG GCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTATEST: gi|67692339|gb|BJ952572.1|BJ952572
genomic: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAGgtcagtttga ... gcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTAT
EST: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAG GCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTATEST: gi|37836261|gb|BJ594269.1|BJ594269
genomic: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAGgtcagtttga ... gcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTAT
EST: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAG GCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTAT
genomic: TTGAAGAGAAGATGGCGAAAGCAACCATGATACCTCGCGAGAATGGAGAGgtcagtttga ... gcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTAT
tctgatggattaggttcactcctcatttctctgcatcactgtgtggcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTATGATGTTTTTGACCCAGCTGAGTATGGACCTCAACCAAGCCAACGG
gtctgat putative branch site (score: 4)
cttctac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttgaatgaacacaaaattatgttaactagtcaaataattgtaaaaaagtgcttaacgacggatactctcttttcttcacgaatgtctgatggattaggttcactcctcatttctctgcatcactgtgtggcttctacagGCTTTCAATGTGTTGAAGTACAATGTGGGACAAAAATACGACTGCCATTATGATGTTTTTGACCCAGCTGAGTATGGACCTCAACCAAGCCAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA