Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcatcgattggtgtaatttggatcttcttatttcatgcgttttggattttatatctgttcttgaacgacatgtttgcactaactatttggtcttgcagGAACTACTTTGCGTTGTGATGTGACTGGAAAAGTTCTAATGAAATGCTTTCTTTCGGGGATGCCGGATCTTAAGCTTGGGCTCAACGATAAAATTGGACT

Basic information

species Physcomitrella patens
transcript PP1S197_28V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S197_28V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: GRMZM2G331032_T01 (Zea mays), 3'ss of exon 6
---ttgcatcgattggtgtaatttggatcttcttatttcatgcgttttggattttatatctgttcttgaacgacatgtttgcactaactatttggtcttgcagGAACTACTTTGCGTTGTGATGTGACTGGAAAAGTTCTAATGAAATGCTTTCTTTCGGGGATGCCGGATCTTAAGCTTGGGCTCAACGATAAAATTGGACT
    |  || ||      |||||| |  || |  | ||   |  |||   |  || |||   ||  ||  |  | ||| | ||  ||    |   || |||||| | |  | |  | ||||||||||| |||||  |||| ||||||||||| ||||| || ||||| ||||| ||||| ||  | || || || ||||||||
gtactctatggaccaacctaattttggactgcacagtt---gtcttt---accttgtattaattgatgttc--cttgtgtacataaatgtgtcattcctgcagGGAGTGTTCTAAGATGTGATGTGACGGGAAAGATTCTTATGAAATGCTTCCTTTCTGGAATGCCTGATCTGAAGCTGGGATTAAATGACAAGATTGGACT

upper sequence: PP1S197_28V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 6
ttgcatcgattggtgtaatttggatcttcttatttcatgcgttttggattttatatctgttcttgaacgacatgtttgcactaactatttggtc-ttgcagGAACTACTTTGCGTTGTGATGTGACTGGAAAAGTTCTAATGAAATGCTTTCTTTCGGGGATGCCGGATCTTAAGCTTGGGCTCAACGATAAAATTGGACT
                    || ||  | || ||  |    |||||     |  || | |  |||     | |  ||  | |||  |||||||  ||| ||| |    | | || |||||||| ||||||||| |||||||||||||||| || || || ||||| ||| | ||| | ||  | || ||||||||||| ||
-------------------gtgaatgctgttcttggaaatattttgtgcaatgcatttctgtttg-----cttactt--agtaaa-atttggtgattgtagGTAGCGTTCTACGCTGTGATGTAACTGGAAAAATTCTAATGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCT

upper sequence: PP1S197_28V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: EFJ22278 (Selaginella moellendorffii), 3'ss of exon 6
ttgcatcgattggtgtaatttggatcttcttatttcatgcgttttggattttatatctgttcttgaacgacatgtttgcactaactatttggtcttgcagGAACTACTTTGCGTTGTGATGTGACTGGAAAAGTTCTAATGAAATGCTTTCTTTCGGGGATGCCGGATCTTAAGCTTGGGCTCAACGATAAAATTGGACT
                                  | | ||| ||   | |  | |   || ||||   || || ||         |  ||  |  || ||| || |   |  | || || || || || ||  |||| ||||| |||||||| ||||| ||||| ||| | ||||| ||||||||||| ||||| |||||
---------------------------------gtaaggcgcttgccactgaaaa---gtccttgttggaaatattc-------ttccttctttatgtagGGACAATCCTCAGATGCGACGTAACAGGGAAGATTCTCATGAAGTGCTTTCTATCGGGCATGCCTGATTTAAAGCTCGGGCTCAACGACAAAATAGGACT

upper sequence: PP1S197_28V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: EFJ25669 (Selaginella moellendorffii), 3'ss of exon 6
ttgcatcgattggtgtaatttggatcttcttatttcatgcgttttggattttatatctgttcttgaacgacatgtttgcactaactatttggtcttgcagGAACTACTTTGCGTTGTGATGTGACTGGAAAAGTTCTAATGAAATGCTTTCTTTCGGGGATGCCGGATCTTAAGCTTGGGCTCAACGATAAAATTGGACT
                                  | | ||| ||   | |  | |   || ||||   || || ||         |  ||  |  || ||| || |   |  | || || || || || ||  |||| ||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| |||||
---------------------------------gtaaggcgcttgccactgaaaa---gtccttgttggaaatattc-------ttccttctttatgtagGGACAATCCTCAGATGCGACGTAACAGGGAAGATTCTCATGAAGTGCTTTCTATCGGGCATGCCTGATCTAAAGCTCGGGCTCAACGACAAAATAGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattttatatctgttcttgaacgacatgtttgcactaactatttggtcttgcagGAACTACTTTGCGTTGTGATGTGACTGGAAAAGTTCTAATGAAATGCTTTCTTTCGGGGATGCCGGATCTTAAGCTTGGGCTCAACGATAAAATTGGACT
                                 cactaac  putative branch site (score: 1)
                                    taactattt  TA-rich tract