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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaccgccactgcatctgatatctggtttttgaaacgatagttttgatttggcttccggtgcttggttaccatactgaaaactgtacctgttcctgatgcagATCACTTCGCTGGTCACTCGTAATCTAAACAGAATTATCGATGTAAACTATTACCCCGTCGAGGCTGCGAGAAGATCGAACATGCGCCATCGTCCTATTG

Basic information

species Physcomitrella patens
transcript PP1S195_46V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268643|gb|FC443697.1|FC443697
EST:     GAAGCAATGGGTACGAGAGCCGTTACTTCGATTTCGAGAAGCTTGGGGAG                         ATCACTTCGCTGGTCACTCGTAATCTAAACAGAATTATCGATGTAAACTAT
genomic: GAAGCAATGGGTACGAGAGCCGTTACTTCGATTTCGAGAAGCTTGGGGAGgtgagaaccg ... cctgatgcagATCACTTCGCTGGTCACTCGTAATCTAAACAGAATTATCGATGTAAACTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggcttccggtgcttggttaccatactgaaaactgtacctgttcctgatgcagATCACTTCGCTGGTCACTCGTAATCTAAACAGAATTATCGATGTAAACTATTACCCCGTCGAGGCTGCGAGAAGATCGAACATGCGCCATCGTCCTATTG
                                            tcctgat  putative branch site (score: 3)
 cctgttcct  CT-rich tract