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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaacttatcttcttgtttaaccatttttgagcctcatctcgcgttatgagcattgttttcatcggccgtgggatgacgcttttcacgcagGGTAAAAGCCAACCCGAAAAATGCTATAAATGAGCATATGTTGGCTAAATTCTTGGATTTTGTGGTATGGGGTCATGAGCACGAGTGCCTCGTGGATCCA

Basic information

species Physcomitrella patens
transcript PP1S18_235V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184088|gb|FC358834.1|FC358834
EST:     GACTGTCCTTTTTCCGATTGGTTCAACATCTTTGTTCTGCATCAAAATAG                         GGTAAAAGCCAACCCGAAAAATGCTATAAATGAGCATATGTTGGCTAAATT
genomic: GACTGTCCTTTTTCCGATTGGTTCAACATCTTTGTTCTGCATCAAAATAGgtaagcaaaa ... tttcacgcagGGTAAAAGCCAACCCGAAAAATGCTATAAATGAGCATATGTTGGCTAAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcgcgttatgagcattgttttcatcggccgtgggatgacgcttttcacgcagGGTAAAAGCCAACCCGAAAAATGCTATAAATGAGCATATGTTGGCTAAATTCTTGGATTTTGTGGTATGGGGTCATGAGCACGAGTGCCTCGTGGATCCA
                                         cgcttttc  CT-rich tract
                attgtttt  TA-rich tract