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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgatggttgtgtatatgagtttgttgtgcgttgaccaacgagcatttttgagctaattgaattcttgaaattaagaattgtcgaatacggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG

Basic information

species Physcomitrella patens
transcript PP1S17_59V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268500|gb|FC444373.1|FC444373
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|208377588|gb|DC922691.1|DC922691
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67728207|gb|BJ978466.1|BJ978466
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|208394494|gb|DC953533.1|DC953533
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162171168|gb|FC347782.1|FC347782
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18339727|gb|BJ171754.1|BJ171754
EST:     TTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18339387|gb|BJ171414.1|BJ171414
EST:     GTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: GTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37845880|gb|BJ603888.1|BJ603888
EST:     TATTGGAGTTNAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18335316|gb|BJ167334.1|BJ167334
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162164731|gb|FC340778.1|FC340778
EST:     GTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: GTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162263267|gb|FC438555.1|FC438555
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37823802|gb|BJ581868.1|BJ581868
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67727983|gb|BJ978242.1|BJ978242
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|208344999|gb|DC925409.1|DC925409
EST:     TATTGGAGNTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162263268|gb|FC438556.1|FC438556
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18340053|gb|BJ172081.1|BJ172081
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|208399703|gb|DC924901.1|DC924901
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37822310|gb|BJ580376.1|BJ580376
EST:     TATNGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37849938|gb|BJ607946.1|BJ607946
EST:     CGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: CGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162216431|gb|FC393264.1|FC393264
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18335899|gb|BJ167920.1|BJ167920
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67720467|gb|BJ970726.1|BJ970726
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18335231|gb|BJ167249.1|BJ167249
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67723616|gb|BJ973875.1|BJ973875
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162216430|gb|FC393263.1|FC393263
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162219191|gb|FC396630.1|FC396630
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|208395218|gb|DC916027.1|DC916027
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67720311|gb|BJ970570.1|BJ970570
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37851880|gb|BJ609888.1|BJ609888
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162164732|gb|FC340779.1|FC340779
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162278511|gb|FC453973.1|FC453973
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37834751|gb|BJ592763.1|BJ592763
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67698281|gb|BJ958514.1|BJ958514
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162277366|gb|FC453172.1|FC453172
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162278510|gb|FC453972.1|FC453972
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162219190|gb|FC396629.1|FC396629
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162237880|gb|FC412507.1|FC412507
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162277367|gb|FC453173.1|FC453173
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTC
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTC
EST: gi|37826715|gb|BJ584727.1|BJ584727
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGG-TTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18339112|gb|BJ171138.1|BJ171138
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCTGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67728189|gb|BJ978448.1|BJ978448
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37821669|gb|BJ579735.1|BJ579735
EST:     TATTGGAGTTGAGCCAAGCGGAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37849484|gb|BJ607492.1|BJ607492
EST:     AAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: AAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|37833051|gb|BJ591063.1|BJ591063
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|67697830|gb|BJ958063.1|BJ958063
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|208381978|gb|DC923837.1|DC923837
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|18335080|gb|BJ167098.1|BJ167098
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
EST: gi|162273731|gb|FC449454.1|FC449454
EST:     TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAG                         GACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG
genomic: TATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 8

ATTATTGGAGTTGAGCCAAGCGAAAGTAGTGTCCTTTCAGGGGGGAAGCCAGgtataaatct ... ggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgagctaattgaattcttgaaattaagaattgtcgaatacggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG
       agctaat  putative branch site (score: 8)
          taattgaattcttgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgatggttgtgtatatgagtttgttgtgcgttgaccaacgagcatttttgagctaattgaattcttgaaattaagaattgtcgaatacggtatggcagGACCTCACAAGATTCAGGGGATTGGAGCAGGGTTTATTCCGGGTATTCTTGATGTGGAGATTCTAGATGAAATCATCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT