1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttgaaacattcccttatctcagtgtgacattaatattagatgtgcttatgtttctcatgtcgatcgatctaaacgtaatcagtgtaatcgtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGTAGTTCTGGATGAGGCTTATGTGGAGTTTGCTCGAGAACCCTCTCGCATT
species | Physcomitrella patens |
transcript | PP1S175_129V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATG TTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGTEST: gi|162231926|gb|FC408792.1|FC408792
genomic: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATGgtaattttct ... gtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGT
EST: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATG TTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGTEST: gi|37836183|gb|BJ594191.1|BJ594191
genomic: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATGgtaattttct ... gtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGT
EST: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATG TTTGGTGTCGGACGATGAGATGAAGACTATATTGGATCTACCCGTCTTAGTEST: gi|162213238|gb|FC389318.1|FC389318
genomic: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATGgtaattttct ... gtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGT
EST: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATG TTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGTEST: gi|162223327|gb|FC400569.1|FC400569
genomic: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATGgtaattttct ... gtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGT
EST: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATG TTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGTEST: gi|208395168|gb|DC915977.1|DC915977
genomic: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATGgtaattttct ... gtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGT
EST: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATG TTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGT
genomic: CAGAATCCTAAGATAGTCTTTTTGACTTCGCCCAACAACCCTGATGGATGgtaattttct ... gtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGT
cttatgtttctcatgtcgatcgatctaaacgtaatcagtgtaatcgtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGTAGTTCTGGATGAGGCTTATGTGGAGTTTGCTCGAGAACCCTCTCGCATT
atctaaa putative branch site (score: 1)
atctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaaacattcccttatctcagtgtgacattaatattagatgtgcttatgtttctcatgtcgatcgatctaaacgtaatcagtgtaatcgtttgtgtagTTTGGTGTCGGACGATGAGTTGAAGACTATATTGGATCTACCCGTCTTAGTAGTTCTGGATGAGGCTTATGTGGAGTTTGCTCGAGAACCCTCTCGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG