1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgtacgtatgacatacgtgccctgctactgctgggatatgtgcgagtaatccaattctaaagcctactttccgtctaagtacttaagttgggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTACTGCATTTGTTTAGGCATAGTCGTTGTATCCTAAAGTAGAGACTGGGAAG
species | Physcomitrella patens |
transcript | PP1S173_83V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAG GCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTACEST: gi|67727274|gb|BJ977533.1|BJ977533
genomic: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagac ... ggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
EST: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAG GCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTACEST: gi|37824444|gb|BJ582510.1|BJ582510
genomic: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagac ... ggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
EST: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAG GCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
genomic: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagac ... ggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
gtaatccaattctaaagcctactttccgtctaagtacttaagttgggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTACTGCATTTGTTTAGGCATAGTCGTTGTATCCTAAAGTAGAGACTGGGAAG
ttctaaa putative branch site (score: 18)
aattctaaa TA-rich tract