1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gccagccttaatacgtccagtgaaatgtatcaatttaagtcttattcagctatccttcaggccatccctcattggttatagtttttcttgtcttgctcagATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAA
species | Physcomitrella patens |
transcript | PP1S172_91V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGG ATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGEST: gi|208356573|gb|DC922363.1|DC922363
genomic: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGGgtaatccttt ... tcttgctcagATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACG
EST: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGG ATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGEST: gi|67691966|gb|BJ952199.1|BJ952199
genomic: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGGgtaatccttt ... tcttgctcagATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACG
EST: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGG ATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGEST: gi|162149917|gb|FC326240.1|FC326240
genomic: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGGgtaatccttt ... tcttgctcagATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACG
EST: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGG ATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACG
genomic: ACTATGATGTTTTTGATCCAGCTGAGTATGGTCCTCAACCAAGCCAGCGGgtaatccttt ... tcttgctcagATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACG
tcagctatccttcaggccatccctcattggttatagtttttcttgtcttgctcagATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAA
tttttcttgtcttgct CT-rich tract
ttatagtttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagccttaatacgtccagtgaaatgtatcaatttaagtcttattcagctatccttcaggccatccctcattggttatagtttttcttgtcttgctcagATGGCTTCCTTTCTCCTTTATTTATCAGACGTCGAAGAGGGCGGAGAAACGATGTTTCCCTTCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA