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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagttggcatcattacatgtagagctttgcttgttgttactatcaccatgattttacttgaattgtgttattaactcgactttttattgcaatttgcagTCGGGCTTAATAAGCGCATATATCATCAAGACAATGTACTTTGGCAG

Basic information

species Physcomitrella patens
transcript PP1S169_48V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195589|gb|FC371890.1|FC371890
EST:     GAGGCAGTTTCTTGTACTTATTCTTCTCGAGTTGCATCCTGGGAATCGCG                         TCGGGCTTAATAAGCGCATATATCATCAAGACAATGTACTTTGGCAG
genomic: GAGGCAGTTTCTTGTACTTATTCTTCTCGAGTTGCATCCTGGGAATCGCGgtgagcctct ... caatttgcagTCGGGCTTAATAAGCGCATATATCATCAAGACAATGTACTTTGGCAG
EST: gi|162255349|gb|FC432075.1|FC432075
EST:     GAGGCAGTTTCTTGTACTTATTCTTCTCGAGTTGCATCCTGGGAATCGCG                         TCGGGCTTAATAAGCGCATATATCATCAAGACAATGTACTTTGGCAG
genomic: GAGGCAGTTTCTTGTACTTATTCTTCTCGAGTTGCATCCTGGGAATCGCGgtgagcctct ... caatttgcagTCGGGCTTAATAAGCGCATATATCATCAAGACAATGTACTTTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatgattttacttgaattgtgttattaactcgactttttattgcaatttgcagTCGGGCTTAATAAGCGCATATATCATCAAGACAATGTACTTTGGCAG
                        tattaac  putative branch site (score: 1)
                                    tttttattgcaattt  TA-rich tract