1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgatctaacttttccacttccacgggaactaacaagtagtttctttcagactcgtgcatttactgcatttatgtacaagacattcctctgggtgcccttgtgtagtgggttgacattgaagccatttctgaatgtttgggagctgaattaaatgtgttggttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCTTGACCAACAAGATTTATGAAAATACCAAGAAGATTACAGCTTATCGAA
species | Physcomitrella patens |
transcript | PP1S168_70V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|18360636|gb|BJ192699.1|BJ192699
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGEST: gi|100386703|gb|BY970244.1|BY970244
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAG
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGGATTAAGTACAACTGTGAAAACGGGAGGTC-AGCTTCTTGAAAEST: gi|162194861|gb|FC370525.1|FC370525
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGG-AGGTCCAGCTCCT-GAAA
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|162223684|gb|FC399457.1|FC399457
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|100405914|gb|BY991447.1|BY991447
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|162162825|gb|FC338087.1|FC338087
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|18365419|gb|BJ197494.1|BJ197494
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|162181557|gb|FC358171.1|FC358171
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|18346813|gb|BJ178858.1|BJ178858
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAEST: gi|18366141|gb|BJ198219.1|BJ198219
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAA
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGTTCCAGCTCCTGAAAGCEST: gi|18371368|gb|BJ202970.1|BJ202970
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGEST: gi|100368990|gb|BY984972.1|BY984972
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGG
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|162193559|gb|FC370462.1|FC370462
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|208384123|gb|DC911259.1|DC911259
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCEST: gi|162164264|gb|FC342079.1|FC342079
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
attgaagccatttctgaatgtttgggagctgaattaaatgtgttggttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCTTGACCAACAAGATTTATGAAAATACCAAGAAGATTACAGCTTATCGAA
tgaattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatctaacttttccacttccacgggaactaacaagtagtttctttcagactcgtgcatttactgcatttatgtacaagacattcctctgggtgcccttgtgtagtgggttgacattgaagccatttctgaatgtttgggagctgaattaaatgtgttggttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGCTTGACCAACAAGATTTATGAAAATACCAAGAAGATTACAGCTTATCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG