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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattctcattaaaccatagaaccctgatctttctagccgtctccttagtgtggaagtctcttgagtacacagattaacccggttgtttcttaaatctagcagCCACCCTTCACCCTCAGTGCTCATCCCTGCCTTGCGAACAGTCGGAAATATTGTTACTGGCGACGATCTTCAAACACAG

Basic information

species Physcomitrella patens
transcript PP1S165_51V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S165_51V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 6
gtaagcattctcattaaaccatagaaccctgat----ctttctagccgtctccttagtgtggaagtctcttgagtacacagattaacccggttgtttcttaaatctagcagCCACCCTTCACCCTCAGTGCTCATCCCTGCCTTGCGAACAGTCGGAAATATTGTTACTGGCGACGATCTTCAAACACAG
|| || ||| | |||     | | ||   |  |    |  | |||  || |   || |     | ||   ||  |        | |      | ||  |   || | | || ||||| || |||||||| ||||| |||||| | || ||||| ||||||||||||||||| || ||| | ||||| |||
gtgagtattataattcttgtagataagtttatttcccccctttagttgtgtagatatttcttca-tcagctgtctgtgagatctgaattttatattattatgattttgtagTCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtggaagtctcttgagtacacagattaacccggttgtttcttaaatctagcagCCACCCTTCACCCTCAGTGCTCATCCCTGCCTTGCGAACAGTCGGAAATATTGTTACTGGCGACGATCTTCAAACACAG
                        gattaac  putative branch site (score: 2)
                                      tttcttaaat  TA-rich tract