1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgaatgaatgttgtaatttctctgttgagttattctgggaaagttggtgttctaccggctttatttacataaacggaggtggttgggtctcgctgccagGTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAATTGGATCCCCATCTCGAGGCGTTGGTTGGAAG
species | Physcomitrella patens |
transcript | PP1S165_107V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGCCACGACAATTATGATCAACTTGTGAAGATTGCAAAG GTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAAEST: gi|37834022|gb|BJ592034.1|BJ592034
genomic: ATGGCCACGACAATTATGATCAACTTGTGAAGATTGCAAAGgcaagctcat ... tcgctgccagGTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAA
EST: ACGACAATTATGATCAACTTGTGAAGATTGCAAAG GTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACGAGTACCGGTTGGAAEST: gi|37829629|gb|BJ587641.1|BJ587641
genomic: ACGACAATTATGATCAACTTGTGAAGATTGCAAAGgcaagctcat ... tcgctgccagGTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAA
EST: ATGATCAACTTGTGAAGATTGCAAAG GTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAA
genomic: ATGATCAACTTGTGAAGATTGCAAAGgcaagctcat ... tcgctgccagGTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAA
tggtgttctaccggctttatttacataaacggaggtggttgggtctcgctgccagGTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAATTGGATCCCCATCTCGAGGCGTTGGTTGGAAG
tctcgct CT-rich tract
tttatttacataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaatgaatgttgtaatttctctgttgagttattctgggaaagttggtgttctaccggctttatttacataaacggaggtggttgggtctcgctgccagGTTTTAGGCACAGACGAGTTGTATGCTTACCTTAACAAGTACCGGTTGGAATTGGATCCCCATCTCGAGGCGTTGGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG