1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcatttggtctagttgaacccatgattttattggattttttaaaataaatttgccaggaattttctttttgttgtagggtgagtttcgagttatgttaatgttagtcatttgagtcaaccggatatgcaatgtacaaccttaatgcttgggttttgactttgaagttctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTGCACTGGATTGATAGGAAGAAATTGGAGCAATTTATTCTTGATTGCCAG
species | Physcomitrella patens |
transcript | PP1S163_87V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCA-GTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGAC GTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGEST: gi|208386165|gb|DC949076.1|DC949076
genomic: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGACgtaagcattt ... tctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCG
EST: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGAC GTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTGEST: gi|18338079|gb|BJ170103.1|BJ170103
genomic: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGACgtaagcattt ... tctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTG
EST: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGAC GTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTGEST: gi|37829001|gb|BJ587013.1|BJ587013
genomic: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGACgtaagcattt ... tctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTG
EST: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGAC GTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTGEST: gi|208362844|gb|DC950794.1|DC950794
genomic: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGACgtaagcattt ... tctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTG
EST: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGAC GTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTGEST: gi|208375311|gb|DC940449.1|DC940449
genomic: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGACgtaagcattt ... tctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTG
EST: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAA-CTTCCGGAC GTTTGTTATTCNTGGTGGGTGCTNGCTAEST: gi|208388699|gb|DC953461.1|DC953461
genomic: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGACgtaagcattt ... tctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTA
EST: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGAC GTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTG
genomic: GGCAAGTTAAATCGGGGGGTCTCAATGGTCGTCCCGAGAAGCTTCCGGACgtaagcattt ... tctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTG
gatatgcaatgtacaaccttaatgcttgggttttgactttgaagttctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTGCACTGGATTGATAGGAAGAAATTGGAGCAATTTATTCTTGATTGCCAG
ttttgac putative branch site (score: 4)
ttctgtttc putative PPT
ttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatttggtctagttgaacccatgattttattggattttttaaaataaatttgccaggaattttctttttgttgtagggtgagtttcgagttatgttaatgttagtcatttgagtcaaccggatatgcaatgtacaaccttaatgcttgggttttgactttgaagttctgtttcagGTTTGTTATTCGTGGTGGGTGCTTGCTAGCCTAGTGATTATGGAGCGAGTGCACTGGATTGATAGGAAGAAATTGGAGCAATTTATTCTTGATTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA