1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtccatatttttcgtaactactttttgttagtcgcagctggttggagattgaaggttagctgatctcattgatataaacgctttttgcggctgaacaacttgaagtgtgtgtttggagtaaaaataaaacattgctggttgctcttgattcattgttaattgttcttgttggaaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAACAAAAGTTAAGGTATGGTGAGAACCCACATCAAAGGGCTGCTTTCTACGA
species | Physcomitrella patens |
transcript | PP1S160_136V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTG AAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAACEST: gi|162222462|gb|FC397196.1|FC397196
genomic: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTGgtatgtccat ... aaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAAC
EST: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTG AAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAACEST: gi|162249504|gb|FC426462.1|FC426462
genomic: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTGgtatgtccat ... aaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAAC
EST: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTG AAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAACEST: gi|162257625|gb|FC433759.1|FC433759
genomic: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTGgtatgtccat ... aaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAAC
EST: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTG AAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAACEST: gi|162226658|gb|FC403756.1|FC403756
genomic: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTGgtatgtccat ... aaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAAC
EST: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTG AAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAAC
genomic: TTACGATTCAGCTGTGGCTGAATGGTTATGGAAGCATCAGCGAGATGGTGgtatgtccat ... aaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAAC
aacattgctggttgctcttgattcattgttaattgttcttgttggaaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAACAAAAGTTAAGGTATGGTGAGAACCCACATCAAAGGGCTGCTTTCTACGA
tgttaat putative branch site (score: 4)
ttccc putative PPT
attcattgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtccatatttttcgtaactactttttgttagtcgcagctggttggagattgaaggttagctgatctcattgatataaacgctttttgcggctgaacaacttgaagtgtgtgtttggagtaaaaataaaacattgctggttgctcttgattcattgttaattgttcttgttggaaattcccagAAGAAACAACTGAATTTCCACCAAGTCTGACAGTACCTCTGACTTTGAAACAAAAGTTAAGGTATGGTGAGAACCCACATCAAAGGGCTGCTTTCTACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT