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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccagctttgaccctctccgtaaatattctagatctatagttttcttaacaatcaagtcgaattgcctgtcgcatggtgttttcttttgtctttggtttagatggattttctagtcctagaaggtcctttttgcctgtttactgcaactttctcaagttttgacatactcgctttctgtcttgtttcaagGGTCAAACTTTCAAGTGGATCGGTGGAATTGTCCATTGGACAATGTGGCCAGAGAACAGCTAAATCAAATTATACCCCCGAGCAATTTAAGGATTCTATT

Basic information

species Physcomitrella patens
transcript PP1S154_130V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162187511|gb|FC363773.1|FC363773
EST:     GGGTGTAAAAGACTTGAGCTTTTGGTGGCTCGCCTACAAACCCCTGGAGG                         GGTCAAACTTTCAAGTGGATCGGTGGAATTGTCCATTGAACAATGTGGCCA
genomic: GGGTGTAAAAGACTTGAGCTTTTGGTGGCTCGCCTACAAACCCCTGGAGGgtaccagctt ... ttgtttcaagGGTCAAACTTTCAAGTGGATCGGTGGAATTGTCCATTGGACAATGTGGCCA
EST: gi|162150977|gb|FC327873.1|FC327873
EST:     GGGTGTAAAAGACTTGAGCTTTTGGTGGCTCGCCTACAAACCCCTGGAGG                         GGTCAAACTTTCAAGTGGATCGGTGGAATTGTCCATTGAACAATGTGGCCA
genomic: GGGTGTAAAAGACTTGAGCTTTTGGTGGCTCGCCTACAAACCCCTGGAGGgtaccagctt ... ttgtttcaagGGTCAAACTTTCAAGTGGATCGGTGGAATTGTCCATTGGACAATGTGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttactgcaactttctcaagttttgacatactcgctttctgtcttgtttcaagGGTCAAACTTTCAAGTGGATCGGTGGAATTGTCCATTGGACAATGTGGCCAGAGAACAGCTAAATCAAATTATACCCCCGAGCAATTTAAGGATTCTATT
                      ttttgac  putative branch site (score: 3)
                                    ctttctgtcttgtttc  putative PPT
                   aagtttt  TA-rich tract