1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgttgccaacaaatgctatattttcttctagatctatttttctggtcatactgcagatgcttttgtgctcattactaggcgagtgtggtgttgttctcagGACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCCGCCGACCATAGTCCACAATCTTATATTTGGACGAACTTGGATCGACTCC
species | Physcomitrella patens |
transcript | PP1S148_87V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGACAAAGTTTCTTGGCAACTCTGTGGACATCTATCCTGTTGGAAG GACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCCEST: gi|162222262|gb|FC397698.1|FC397698
genomic: TTGAGGACAAAGTTTCTTGGCAACTCTGTGGACATCTATCCTGTTGGAAGgcaagttatc ... ttgttctcagGACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCC
EST: TTGAGGACAAAGTTTCTTGGCAACTCTGTGGACATCTATCCTGTTGGAAG GACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCCEST: gi|162178028|gb|FC354330.1|FC354330
genomic: TTGAGGACAAAGTTTCTTGGCAACTCTGTGGACATCTATCCTGTTGGAAGgcaagttatc ... ttgttctcagGACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCC
EST: TTGAGGACAAAGTTTCTTGGCAACTCTGTGGACATCTATCCTGTTGGAAG GACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCC
genomic: TTGAGGACAAAGTTTCTTGGCAACTCTGTGGACATCTATCCTGTTGGAAGgcaagttatc ... ttgttctcagGACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCC
tcatactgcagatgcttttgtgctcattactaggcgagtgtggtgttgttctcagGACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCCGCCGACCATAGTCCACAATCTTATATTTGGACGAACTTGGATCGACTCC
ttgttctc CT-rich tract
attacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgccaacaaatgctatattttcttctagatctatttttctggtcatactgcagatgcttttgtgctcattactaggcgagtgtggtgttgttctcagGACTCGGGTTCTTTTGAAAAAATCAAACATGGTTTTGGATTTGGTGCCTCCGCCGACCATAGTCCACAATCTTATATTTGGACGAACTTGGATCGACTCC
- - - - -caaatgc
- - - - - - - - - - - - - - - - - - - - - - - - tactgca