1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attgcacaatctgtcgagtctatcttttctattaattgattgattttttttagcaagttctgctcttgcaaataatgaagtggttttgtggaaccatcagGTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTGGAACGTATTCTCAGACATTTACAACCACGACTGCAGTCCAACGGATCTG
species | Physcomitrella patens |
transcript | PP1S146_124V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTG GTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTGEST: gi|208347979|gb|DC917644.1|DC917644
genomic: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTGgtatggtttt ... gaaccatcagGTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTG
EST: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTG GTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTGEST: gi|37827131|gb|BJ585143.1|BJ585143
genomic: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTGgtatggtttt ... gaaccatcagGTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTG
EST: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTG GTGTGAGGCATATTCAACTTACCCCTCGTACATACGACTTGCTGCATGCGTEST: gi|162184564|gb|FC360038.1|FC360038
genomic: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTGgtatggtttt ... gaaccatcagGTGTGAGGCATATTCAACTTA-CCCTCGTACATACGACTTGCTGCATGCGT
EST: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTG GTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTG
genomic: ACCTTGAAAATCGTTTATGATCGTGGGTTCATCGGCTCCTATCATGATTGgtatggtttt ... gaaccatcagGTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTG
ttttttagcaagttctgctcttgcaaataatgaagtggttttgtggaaccatcagGTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTGGAACGTATTCTCAGACATTTACAACCACGACTGCAGTCCAACGGATCTG
aaataatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgcacaatctgtcgagtctatcttttctattaattgattgattttttttagcaagttctgctcttgcaaataatgaagtggttttgtggaaccatcagGTGTGAGGCATATTCAACTTACCCTCGTACATACGACTTGCTGCATGCGTGGAACGTATTCTCAGACATTTACAACCACGACTGCAGTCCAACGGATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-ttgcaca