1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactatctctttctatgtcttttggcggtctttatacatttttccgtgatgattggactcgagtcatattcagtaaacgcatacgtttaaatagccctattctttcggcggcgcttctacaacgtacttactgcttcgtacttggagtattattgaaaagaactctgatttaacttcctgttcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTTGGACACCTAATGAATTCGAAGTTTTTGAAACAGAAGAAAAAATGCAAC
species | Physcomitrella patens |
transcript | PP1S138_84V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTEST: gi|162190026|gb|FC366600.1|FC366600
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTEST: gi|37834545|gb|BJ592557.1|BJ592557
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTEST: gi|37825557|gb|BJ583623.1|BJ583623
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTEST: gi|162190025|gb|FC366599.1|FC366599
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTEST: gi|67696545|gb|BJ956778.1|BJ956778
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTEST: gi|37822604|gb|BJ580670.1|BJ580670
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTEST: gi|67694612|gb|BJ954845.1|BJ954845
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
EST: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTG AGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
genomic: CTGTCTGTACGGAGGGCGAGAACATCTCACCCCAGGCCTCAAGAATATTGgtactatctc ... tcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGT
cgtacttggagtattattgaaaagaactctgatttaacttcctgttcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTTGGACACCTAATGAATTCGAAGTTTTTGAAACAGAAGAAAAAATGCAAC
atttaac putative branch site (score: 3)
cttcctgttc CT-rich tract
tattattgaaaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatctctttctatgtcttttggcggtctttatacatttttccgtgatgattggactcgagtcatattcagtaaacgcatacgtttaaatagccctattctttcggcggcgcttctacaacgtacttactgcttcgtacttggagtattattgaaaagaactctgatttaacttcctgttcggttgcagAGGTTGCTAGGTGTTCAAATGGCTGCTTTCAAGATGCACCTGCGATGTCGTTGGACACCTAATGAATTCGAAGTTTTTGAAACAGAAGAAAAAATGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA