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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcattttatatttatttcaaaagaatcgctcatgatttcagttctcgattctagcagtgcaacagattcaagttcatgaaggaatagaaacgatttagggttgataatgtttttagggtcaactttttcatgaaattttctcttcggctacaacaatgctctgacggttgcgtcttttttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCTTCATGTTCAGCAATTTTGTGGCTAGCCGGGTCCAGTTCACCTTTTATT

Basic information

species Physcomitrella patens
transcript PP1S134_26V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162189955|gb|FC365619.1|FC365619
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: gi|162259126|gb|FC435185.1|FC435185
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: gi|162272666|gb|FC448292.1|FC448292
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: gi|162189954|gb|FC365618.1|FC365618
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: gi|37831023|gb|BJ589035.1|BJ589035
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: gi|37843892|gb|BJ601900.1|BJ601900
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: gi|37845078|gb|BJ603086.1|BJ603086
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
EST: gi|162235645|gb|FC411390.1|FC411390
EST:     GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAG                         GATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC
genomic: GTCATTCGTCAAGTTCAAAGCAATCTGAAGGGACTAGTGCAATGGAAGAGgtagcatttt ... ttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttctcttcggctacaacaatgctctgacggttgcgtcttttttctaagcagGATTAAGTACGAAGGAGGTTCTTATAGCTGTCTATGTATCTGCATTGGACCTTCATGTTCAGCAATTTTGTGGCTAGCCGGGTCCAGTTCACCTTTTATT
                         ctctgac  putative branch site (score: 3)
                                  ttgcgtcttttttct  putative PPT
                                         ttttttctaa  TA-rich tract