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...tatgtcattttggtggtcacggtctcgcttttgtatgcaggcgtttttcttaacagatttttagagcttagacagcttataagtttgctgtttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCCCGTTGGGAGGAGTGCCTCAGAAGCCATACAGATATTATGACCCTAAGA
species | Physcomitrella patens |
transcript | PP1S132_95V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|67718471|gb|BJ968730.1|BJ968730
genomic: TCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|100356048|gb|BY946170.1|BY946170
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|100380016|gb|BY968804.1|BY968804
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|18351892|gb|BJ183944.1|BJ183944
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|100446010|gb|CJ970309.1|CJ970309
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|162196336|gb|FC375406.1|FC375406
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|100390341|gb|BY952749.1|BY952749
genomic: CGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATCTTCEST: gi|208390390|gb|DC933435.1|DC933435
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCEST: gi|100448896|gb|CJ973195.1|CJ973195
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCNAG CCAATTATATTCTTGCCTAATEST: gi|162267156|gb|FC443387.1|FC443387
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAAT
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|100417339|gb|BY957283.1|BY957283
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGTTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|18365276|gb|BJ197350.1|BJ197350
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|208344839|gb|DC912673.1|DC912673
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCANAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|208397779|gb|DC912002.1|DC912002
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|208352476|gb|DC910190.1|DC910190
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCANAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|18361573|gb|BJ193639.1|BJ193639
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|208384190|gb|DC911298.1|DC911298
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|18371678|gb|BJ203280.1|BJ203280
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCATANTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|18332250|gb|BJ164263.1|BJ164263
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCEST: gi|162263809|gb|FC438428.1|FC438428
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
EST: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAG CCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
genomic: CTGGTGCCTTGAGGGTTGGCGCAGAGTTCATATCGAGGCATTATGCCAAGgtaatgtttt ... tttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTC
tttcttaacagatttttagagcttagacagcttataagtttgctgtttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCCCGTTGGGAGGAGTGCCTCAGAAGCCATACAGATATTATGACCCTAAGA
tcttaac putative branch site (score: 2)
ttataagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtcattttggtggtcacggtctcgcttttgtatgcaggcgtttttcttaacagatttttagagcttagacagcttataagtttgctgtttattgcagCCAATTATATTCTTGCCTAATCCAACGTGGGGAAATCACAACAAGATTTTCCCGTTGGGAGGAGTGCCTCAGAAGCCATACAGATATTATGACCCTAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC