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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatctattcttacctcttggcaaaccccaacaactttggtgtgtagtgttgagagaagcagtctatcatcagctttaacttcaaagctagaacgtataatcgactcctcgtttgttgcttcgaattggatcatggttgtggaagtgttcatggctgatgtattcctggcgattgggatagGTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAATGATGCCCTTTCGCAGTTTCGGGACGAGGTGATATCGAAGGCTTTTCCGT

Basic information

species Physcomitrella patens
transcript PP1S130_272V6.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162177510|gb|FC353771.1|FC353771
EST:     CGGTATGATGCAACACCCCCATTTCGTGCAG                         GTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT
genomic: CGGTATGATGCAACACCCCCATTTCGTGCAGgtactaatct ... attgggatagGTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT
EST: gi|208363937|gb|DC950341.1|DC950341
EST:     GGTGTACCATGATCTTTCTCGGTATGATGCAACACCCCCATTTCGTGCAG                         GTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT
genomic: GGTGTACCATGATC-TTCTCGGTATGATGCAACACCCCCATTTCGTGCAGgtactaatct ... attgggatagGTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatcatggttgtggaagtgttcatggctgatgtattcctggcgattgggatagGTCACACCGAAATTCTCGAAGCAGTACGCAAGTCTAGGGAACGTGATCAATGATGCCCTTTCGCAGTTTCGGGACGAGGTGATATCGAAGGCTTTTCCGT
                          ggctgat  putative branch site (score: 4)
                               atgtatt  TA-rich tract