1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaagaaaatatgtattttcgtactagttatgctggttatctttgttctgcatctgaattcttttggttttctgttgtactatatgttgatcaggatgataactttaagggtttaactgtgaacatctatgtactactgtaacttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTATCACGACGACTGAAAGAGGAGCCATTCCATCGCTTCCTGATAATGAGA
species | Physcomitrella patens |
transcript | PP1S127_105V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162255602|gb|FC431600.1|FC431600
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162159123|gb|FC334294.1|FC334294
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTCGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|19783707|gb|BQ040057.1|BQ040057
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCTTTAGCEST: gi|18335485|gb|BJ167505.1|BJ167505
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGC-GGAGC
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|18340869|gb|BJ172900.1|BJ172900
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|18339396|gb|BJ171423.1|BJ171423
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|208396708|gb|DC920388.1|DC920388
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162193816|gb|FC371291.1|FC371291
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTCGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162255603|gb|FC431601.1|FC431601
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162159124|gb|FC334295.1|FC334295
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTCGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|67724820|gb|BJ975079.1|BJ975079
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162197072|gb|FC372450.1|FC372450
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTCGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162263645|gb|FC438881.1|FC438881
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162197071|gb|FC372449.1|FC372449
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTCGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|208386135|gb|DC949046.1|DC949046
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162280370|gb|FC456075.1|FC456075
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162263646|gb|FC438882.1|FC438882
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162193789|gb|FC371290.1|FC371290
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTCGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|37830259|gb|BJ588271.1|BJ588271
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTEST: gi|162280371|gb|FC456076.1|FC456076
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
EST: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAG GATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
genomic: TTTGTGCTGGTCTTCTGAGCCAGCTTGCGAAGTCTCCATCCATTGTTGAGgtaagaagaa ... acttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCT
tgataactttaagggtttaactgtgaacatctatgtactactgtaacttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTATCACGACGACTGAAAGAGGAGCCATTCCATCGCTTCCTGATAATGAGA
actttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagaaaatatgtattttcgtactagttatgctggttatctttgttctgcatctgaattcttttggttttctgttgtactatatgttgatcaggatgataactttaagggtttaactgtgaacatctatgtactactgtaacttgcacagGATGAAGAGAAGCTGCGTGAGGCTCTCACATTTGCAAATGCTTGCGGAGCTATCACGACGACTGAAAGAGGAGCCATTCCATCGCTTCCTGATAATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG