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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccttgaacgataatgaaattatattttattaaatttgattatactgtttgtgtgttgcttcttctgatctcactgatgtaattttgatcaacatgaagAATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAG

Basic information

species Physcomitrella patens
transcript PP1S11_99V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351249|gb|DC922056.1|DC922056
EST:     CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGA                         AATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
genomic: CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGAgtaagtccaa ... caacatgaagAATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
EST: gi|208384565|gb|DC907066.1|DC907066
EST:     CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGA                         AATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
genomic: CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGAgtaagtccaa ... caacatgaagAATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
EST: gi|208348150|gb|DC920941.1|DC920941
EST:     CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGA                         AATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
genomic: CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGAgtaagtccaa ... caacatgaagAATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
EST: gi|208397157|gb|DC908171.1|DC908171
EST:     CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGA                         AATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
genomic: CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGAgtaagtccaa ... caacatgaagAATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
EST: gi|208387835|gb|DC941404.1|DC941404
EST:     CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGA                         AATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT
genomic: CTCACAAGGGTACATATGCTGATGATTGCATTGTGGAGCGTGTTACTCGAgtaagtccaa ... caacatgaagAATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttgtgtgttgcttcttctgatctcactgatgtaattttgatcaacatgaagAATAAGTGTTACATTGTGGCCACGTGTGATCGAGACTTAAAGCGTCGCATTCGGAAG
                                atgtaatttt  TA-rich tract