1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgtggtttgcacaagggtttttgaccgcaaggattggggtttcgcttcatgatgtctttctactgaatcaagtgtgttagtgtttactaaagttcaaggcaccttatcggggaactgaaggaacccacttgcttcgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGAGCATACCCATTCGAGGATCCCTATGACCCAAGGAATTTCAGGAAAACCA
species | Physcomitrella patens |
transcript | PP1S116_98V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GC-TACATTGCTCCCAGAG-TCCTGCAAAAGAAAGAGTACGATGGGCA-G ATTGCGGATGTGTGGTCGTGNCG-TGTGACCTTGTACGTEST: gi|162268203|gb|FC443881.1|FC443881
genomic: GCCTACATTGCTCC-AGAGGTCCTGCAAAAGAAAGAGTACGATGG-CAAGgtacgtggtt ... cgagatgcagATTGCGGATGTGTGGTCGTG-CGGTGTGACCTTGTACGT
EST: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAG ATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGAEST: gi|162273827|gb|FC449758.1|FC449758
genomic: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAGgtacgtggtt ... cgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGA
EST: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAG ATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGAEST: gi|100435837|gb|BY961115.1|BY961115
genomic: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAGgtacgtggtt ... cgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGA
EST: CTGCCTACATTGCTCCAGAAGTCCTGCAAAAGAAAGAGTACGATGGCAAG ATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGEST: gi|100404888|gb|BY991331.1|BY991331
genomic: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAGgtacgtggtt ... cgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTG
EST: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCNAG ATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGAEST: gi|162156539|gb|FC332147.1|FC332147
genomic: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAGgtacgtggtt ... cgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGA
EST: GCAAAAGAAAGAGTACGATGGCAAG ATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGAEST: gi|162231404|gb|FC406827.1|FC406827
genomic: GCAAAAGAAAGAGTACGATGGCAAGgtacgtggtt ... cgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGA
EST: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAG ATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGA
genomic: CTGCCTACATTGCTCCAGAGGTCCTGCAAAAGAAAGAGTACGATGGCAAGgtacgtggtt ... cgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGA
aagttcaaggcaccttatcggggaactgaaggaacccacttgcttcgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGAGCATACCCATTCGAGGATCCCTATGACCCAAGGAATTTCAGGAAAACCA
tactaaa putative branch site (score: 38)
cttgcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtggtttgcacaagggtttttgaccgcaaggattggggtttcgcttcatgatgtctttctactgaatcaagtgtgttagtgtttactaaagttcaaggcaccttatcggggaactgaaggaacccacttgcttcgagatgcagATTGCGGATGTGTGGTCGTGCGGTGTGACCTTGTACGTCATGTTGGTGGGAGCATACCCATTCGAGGATCCCTATGACCCAAGGAATTTCAGGAAAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA