1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagactggaaggaaatatttttgcagcactttaatatcttgtcaagcagaataaaatctactggatcacacagttttaatatttgtgtcgcgtgtagcttatgtttgccatgcacgccttgctggtaggaaatatgagtattccttctttgtcataagttctgaccatttcttccgtgattgcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACCAGTTGCTTACAGAGATGGATGGTATGAACGCGAAAAAGACGGTGTTCA
species | Physcomitrella patens |
transcript | PP1S115_6V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|162236747|gb|FC413426.1|FC413426
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|37828141|gb|BJ586153.1|BJ586153
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: GATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|162272739|gb|FC448365.1|FC448365
genomic: GATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|37839435|gb|BJ597443.1|BJ597443
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: ATCGCCAATCAG CGTGNCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|162157199|gb|FC332833.1|FC332833
genomic: ATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|162272738|gb|FC448364.1|FC448364
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|162255687|gb|FC431685.1|FC431685
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|100425753|gb|BY977103.1|BY977103
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGGCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACEST: gi|162163247|gb|FC339365.1|FC339365
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
EST: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAG CGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
genomic: CAGCTCCTTGTGTCCTCTTTTTTGATGAGCTAGATTCTATCGCCAATCAGgtaagactgg ... gcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAAC
agtattccttctttgtcataagttctgaccatttcttccgtgattgcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACCAGTTGCTTACAGAGATGGATGGTATGAACGCGAAAAAGACGGTGTTCA
ttctgac putative branch site (score: 5)
ataagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagactggaaggaaatatttttgcagcactttaatatcttgtcaagcagaataaaatctactggatcacacagttttaatatttgtgtcgcgtgtagcttatgtttgccatgcacgccttgctggtaggaaatatgagtattccttctttgtcataagttctgaccatttcttccgtgattgcttgtgcagCGTGGCAGTAGTCAAGGCGATGGTGGTGGCGCTGCTGATCGCGTCTTGAACCAGTTGCTTACAGAGATGGATGGTATGAACGCGAAAAAGACGGTGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA