1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggctcactaacttagcaatggtcactttagtccgcacgtcgaaaagcgtggataatttactatgtgtttaggaaaaaaattaacttctttatttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG
species | Physcomitrella patens |
transcript | PP1S101_67V6.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG GATGTGCAATTCACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGAEST: gi|208382034|gb|DC919921.1|DC919921
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
EST: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG GATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGAEST: gi|162192001|gb|FC367214.1|FC367214
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
EST: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG GATGTGCAATTTACAATTTGEST: gi|208351996|gb|DC925805.1|DC925805
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTG
EST: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG GATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
genomic: AAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAGgtacgacctg ... atttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGA
gcgtggataatttactatgtgtttaggaaaaaaattaacttctttatttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG
aattaac putative branch site (score: 2)
cttctttatttc CT-rich tract
tttaggaaaaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctcactaacttagcaatggtcactttagtccgcacgtcgaaaagcgtggataatttactatgtgtttaggaaaaaaattaacttctttatttcggcagGATGTGCAATTTACAATTTGGGAACAGGGAAAGGCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC