1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagccgttgatttatttgattgtatatatgtgatggaagtgtgctgtttacctgaaagaatgtgggtggggattgacacattaaatgttcaaccttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG
species | Physcomitrella patens |
transcript | PP1S101_67V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG AAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCEST: gi|208351996|gb|DC925805.1|DC925805
genomic: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAGgtagccgttg ... ttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTC
EST: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG AAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCEST: gi|208388227|gb|DC956977.1|DC956977
genomic: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAGgtagccgttg ... ttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTC
EST: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG AAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCEST: gi|208382034|gb|DC919921.1|DC919921
genomic: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAGgtagccgttg ... ttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTC
EST: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG AAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCEST: gi|208363974|gb|DC947218.1|DC947218
genomic: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAGgtagccgttg ... ttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTC
EST: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG AAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCEST: gi|208358116|gb|DC946744.1|DC946744
genomic: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAGgtagccgttg ... ttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTC
EST: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAG GAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTC
genomic: GCACCACTGTGCTTGAGATGGTGGCAGCATTTGAAGAAGCATCTGGAAAGgtagccgttg ... ttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTC
acctgaaagaatgtgggtggggattgacacattaaatgttcaaccttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG
gattgac putative branch site (score: 15)
ccttctttgc putative PPT
attaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccgttgatttatttgattgtatatatgtgatggaagtgtgctgtttacctgaaagaatgtgggtggggattgacacattaaatgttcaaccttctttgcagAAAATTCCATTGAGATTTGCAGGTCGTCGTCCTGGCGACTCCAGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG