1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatatctttatcatcccttctgtgactattgatcgtggttgataatctctttctctgtattttgaaattttgcttatttattgcacatttcaatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCATATGAAGAGAGCAAGAAGCCCCATCATCATGCCCATGAAGATTAGTACG
species | Physcomitrella patens |
transcript | PP1S101_185V6.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|37829213|gb|BJ587225.1|BJ587225
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|37839981|gb|BJ597989.1|BJ597989
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|162175217|gb|FC351415.1|FC351415
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|208375549|gb|DC945108.1|DC945108
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|37833498|gb|BJ591510.1|BJ591510
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|208382616|gb|DC919798.1|DC919798
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|37832046|gb|BJ590058.1|BJ590058
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|208360731|gb|DC946455.1|DC946455
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|162162823|gb|FC338085.1|FC338085
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCAEST: gi|37852866|gb|BJ610874.1|BJ610874
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
EST: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAG GTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
genomic: AACGTGACTCATTGCGTATGCGTGATGGTGGCCCTTTTGTCTTCGCACAGgtacctcctt ... caatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCA
tctctttctctgtattttgaaattttgcttatttattgcacatttcaatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCATATGAAGAGAGCAAGAAGCCCCATCATCATGCCCATGAAGATTAGTACG
tgtattttgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatctttatcatcccttctgtgactattgatcgtggttgataatctctttctctgtattttgaaattttgcttatttattgcacatttcaatttgcagGTGAAACACAAAATAGGCGTTTCAGACATTGTGAACCACGTTTTGAAGGCATATGAAGAGAGCAAGAAGCCCCATCATCATGCCCATGAAGATTAGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcaca