1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctttgaactgaacagcttgtaaccaagtttcccaaaaatcgagaacttatctcagaatgaatctattgactcttgtttcaacctctgttgaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAGCGCGTTTGGTTGCAAATCCTGGGTGCTACCCAACTTCAATTCAGCTTC
species | Physcomitrella patens |
transcript | PP1S101_184V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|162265711|gb|FC443117.1|FC443117
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|162179978|gb|FC356049.1|FC356049
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|162168515|gb|FC344452.1|FC344452
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|162226448|gb|FC403546.1|FC403546
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|100379495|gb|BY949797.1|BY949797
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: GACGTATGAAGAGTGGNTACA-TGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|162234961|gb|FC411748.1|FC411748
genomic: GACGTATGAAGAGTGG-TACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|162261823|gb|FC438347.1|FC438347
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAG ACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAEST: gi|100389059|gb|BY952263.1|BY952263
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCA
EST: AGACGTATGAGGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACCG ACTGAAGCTGTGTATGGGATTA-CAGGAGT-ATATTGAGACGAAATCCGAG
genomic: AGACGTATGAAGAGTGGTACAATGGACCCCATCGTGCTCCTAAGCTACAGgtttctttct ... gaatttgcagACTGAAGCTGTGTATGG-ATTAACAG-AGTTATATAGAGACGAAATCCGAG
acttatctcagaatgaatctattgactcttgtttcaacctctgttgaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAGCGCGTTTGGTTGCAAATCCTGGGTGCTACCCAACTTCAATTCAGCTTC
tattgac putative branch site (score: 5)
aatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttgaactgaacagcttgtaaccaagtttcccaaaaatcgagaacttatctcagaatgaatctattgactcttgtttcaacctctgttgaatttgcagACTGAAGCTGTGTATGGATTAACAGAGTTATATAGAGACGAAATCCGAGCAGCGCGTTTGGTTGCAAATCCTGGGTGCTACCCAACTTCAATTCAGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - ctgaaca