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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattctagtttcgtgttctctttaggggatgtattggaatggttaatgtttgagtaaggcctatctcaagcttagtgttccgttcctatttgtattgcagGAAATGGGATTAAAGAATTTGTGGTAGATCACGATGATGAGCACTTCATTGCTTTCGGCAATCTCAATATTCAAGATATGGAG

Basic information

species Physcomitrella patens
transcript PP1S100_63V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362071|gb|DC950506.1|DC950506
EST:     TCTAAAGTGGTATCGAATTCATG                         GAAATGGGATTAAAGAATTTGTGGTAGATCACGATGATGAGCACTTCGTTG
genomic: TCTAAAGTGGTATCGAATTCATGgtaaaagctc ... tgtattgcagGAAATGGGATTAAAGAATTTGTGGTAGATCACGATGATGAGCACTTCATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttgagtaaggcctatctcaagcttagtgttccgttcctatttgtattgcagGAAATGGGATTAAAGAATTTGTGGTAGATCACGATGATGAGCACTTCATTGCTTTCGGCAATCTCAATATTCAAGATATGGAG
 ggttaat  putative branch site (score: 4)
                                ttccgttcctattt  putative PPT
                                         tatttgtatt  TA-rich tract