1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaattaaataccggctagttatttttgtggagcatgcatttgccaaaacaatacccagaaacacgagaatggcaggttgaaaagtggacagccttctgacttccagttgtttaatcagctatctatctgatatcgcgagtttctgaattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTACAAGCTTTGACGCCATTGATTGGCGTCCACTCAAAGATCCTTCCGAGCAG
species | Physcomitrella patens |
transcript | PP1S9_317V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAG GAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTACEST: gi|100406113|gb|BY991546.1|BY991546
genomic: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAGgtaattaaat ... aattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTAC
EST: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAG GAAATGAGGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTACEST: gi|162252662|gb|FC428699.1|FC428699
genomic: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAGgtaattaaat ... aattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTAC
EST: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAG GAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTACEST: gi|162178385|gb|FC355207.1|FC355207
genomic: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAGgtaattaaat ... aattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTAC
EST: ATCATCTACAAAGTTGACTGTGGAG GAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTACEST: gi|100418237|gb|BY993400.1|BY993400
genomic: ATCATCTACAAAGTTGACTGTGGAGgtaattaaat ... aattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTAC
EST: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAG GAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTAC
genomic: CATCTGGAACCCAAGTGCGGAATACATCATCTACAAAGTTGACTGTGGAGgtaattaaat ... aattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTAC
ttccagttgtttaatcagctatctatctgatatcgcgagtttctgaattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTACAAGCTTTGACGCCATTGATTGGCGTCCACTCAAAGATCCTTCCGAGCAG
atctgat putative branch site (score: 4)
ttgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaaataccggctagttatttttgtggagcatgcatttgccaaaacaatacccagaaacacgagaatggcaggttgaaaagtggacagccttctgacttccagttgtttaatcagctatctatctgatatcgcgagtttctgaattgtacagGAAATGAAGACTGGGTCCATTTCTCAGTGGAGTTGGCCACGGGCACAGTACAAGCTTTGACGCCATTGATTGGCGTCCACTCAAAGATCCTTCCGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG