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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttaatttcagatttggacatacttgtccaggctagatatcaatcagcttagattttagataatattggtttaaagtttgttatcttggtgcttgacagCAAAATGAGTTCAATGACATTGTGAAGATTGGTCGCACACACACACAAGACGCTGTCCCAATCACTCTCGGACAAGTTTTTAGTGCCTATTGCACACAG

Basic information

species Physcomitrella patens
transcript PP1S9_243V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192987|gb|FC369903.1|FC369903
EST:     GTAGGCTGATTCCTCATTTGCGAGGTCTACATGAAGCTCTGATTCAAAAG                         CAAAATGAGTTCAATGACATTGTGAAGATTGGTCGNNNNNNNNNNNNAGAC
genomic: GTAGGCTGATTCCTCATTTGCGAGGTCTACATGAAGCTCTGATTCAAAAGgtaaccatcc ... tgcttgacagCAAAATGAGTTCAATGACATTGTGAAGATTGGTCGCACACACACACAAGAC
EST: gi|162189500|gb|FC365514.1|FC365514
EST:     GTAGGCTGATTCCTCATTTGCGAGGTCTACATGAAGCTCTGATTCAAAAG                         CAAAATGAGTTCAATGACATTGTGAAGATTGGTCGNNNNNNNNNNNNAGAC
genomic: GTAGGCTGATTCCTCATTTGCGAGGTCTACATGAAGCTCTGATTCAAAAGgtaaccatcc ... tgcttgacagCAAAATGAGTTCAATGACATTGTGAAGATTGGTCGCACACACACACAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcttagattttagataatattggtttaaagtttgttatcttggtgcttgacagCAAAATGAGTTCAATGACATTGTGAAGATTGGTCGCACACACACACAAGACGCTGTCCCAATCACTCTCGGACAAGTTTTTAGTGCCTATTGCACACAG
        attttagataatattg  TA-rich tract