1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attccgaagaaattcgcagcaatattgccatttttcggatggtgtactccgaattgaagtcaacacagctaattactttgcatgggttttggacttgcagGCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGAATCCCCTACGGCAGAAAGAAAGGTGGTGTCAAAGTGTACGAGCTTACCG
species | Physcomitrella patens |
transcript | PP1S9_179V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTT-CAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAG GCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGAEST: gi|19783742|gb|BQ040061.1|BQ040061
genomic: GTTACAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAGgtagagtaca ... ggacttgcagGCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGA
EST: GTTACAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAG GCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGAEST: gi|100439484|gb|BY961956.1|BY961956
genomic: GTTACAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAGgtagagtaca ... ggacttgcagGCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGA
EST: GTTACAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAG GCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGA
genomic: GTTACAACAGCTTGGGTGCATTTGCCACAATCAACCACTTGCATTTCCAGgtagagtaca ... ggacttgcagGCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGA
actccgaattgaagtcaacacagctaattactttgcatgggttttggacttgcagGCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGAATCCCCTACGGCAGAAAGAAAGGTGGTGTCAAAGTGTACGAGCTTACCG
agctaat putative branch site (score: 130)
taattacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccgaagaaattcgcagcaatattgccatttttcggatggtgtactccgaattgaagtcaacacagctaattactttgcatgggttttggacttgcagGCCTACTATCTGGCAGCTCCCTTTCCGATTGAAAGAGCACCTACTGTGCGAATCCCCTACGGCAGAAAGAAAGGTGGTGTCAAAGTGTACGAGCTTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT