1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatttaacatattttttggttgtgggatgtgaccttatccatcgatgtgtcatagaataagggtaagaagtctttctgctgatgatatttgttttgattgtatgttatctgaaatgaatctgggcggcgtcggtgctgaaggttcggtgtgtaatctttaaatgtgtatcttgttctgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGTTATCAACTTGATATGCGCACGTTTGACGAATTATCAGACGGAGATTACG
species | Physcomitrella patens |
transcript | PP1S90_78V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAG GAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGTEST: gi|162266790|gb|FC442306.1|FC442306
genomic: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAGgtatttaaca ... tgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGT
EST: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAG GAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGTEST: gi|162255557|gb|FC431347.1|FC431347
genomic: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAGgtatttaaca ... tgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGT
EST: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAG GAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGTEST: gi|162254981|gb|FC431166.1|FC431166
genomic: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAGgtatttaaca ... tgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGT
EST: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAG GAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGTEST: gi|67697912|gb|BJ958145.1|BJ958145
genomic: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAGgtatttaaca ... tgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGT
EST: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAG GAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGT
genomic: AGTACAGGAGTTTCGGTTGTGCGTTGGAATTTGTTACGAACAAGTCTCAGgtatttaaca ... tgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGT
ggtgctgaaggttcggtgtgtaatctttaaatgtgtatcttgttctgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGTTATCAACTTGATATGCGCACGTTTGACGAATTATCAGACGGAGATTACG
tcttgttctgtcct CT-rich tract
tgtaatctttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttaacatattttttggttgtgggatgtgaccttatccatcgatgtgtcatagaataagggtaagaagtctttctgctgatgatatttgttttgattgtatgttatctgaaatgaatctgggcggcgtcggtgctgaaggttcggtgtgtaatctttaaatgtgtatcttgttctgtcctacagGAAGGGTCACAGTTTTGTCGAGGATTTGGAGGATTCGGTGGAATTTTGCGTTATCAACTTGATATGCGCACGTTTGACGAATTATCAGACGGAGATTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT