1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatttcatgtcatagagccgcatttgtgctcatttatataggtgtaattctggttgtgtttggatgtgagctacgtttaaaaatttcttgtggtattatgatcaatgctgccccggatattgggccacttttctcagcaagcatgctcttgtgtgcagAGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGAGTCAACAGATGATATCTTAAATGCTGCTATTGGATACGCACTGAAACGG
species | Physcomitrella patens |
transcript | PP1S90_134V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAG AGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGAEST: gi|67697968|gb|BJ958201.1|BJ958201
genomic: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAGgtatttcatg ... ttgtgtgcagAGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGA
EST: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAG AGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGAEST: gi|37838416|gb|BJ596424.1|BJ596424
genomic: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAGgtatttcatg ... ttgtgtgcagAGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGA
EST: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAG AGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGAEST: gi|37852051|gb|BJ610059.1|BJ610059
genomic: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAGgtatttcatg ... ttgtgtgcagAGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGA
EST: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAG AGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGA
genomic: ACCTGGACTTGCAGCGAGGAGTCACCAGCTCATCACAGCTTGGTCGTTAGgtatttcatg ... ttgtgtgcagAGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGA
aatgctgccccggatattgggccacttttctcagcaagcatgctcttgtgtgcagAGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGAGTCAACAGATGATATCTTAAATGCTGCTATTGGATACGCACTGAAACGG
tgctctt CT-rich tract
atatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcatgtcatagagccgcatttgtgctcatttatataggtgtaattctggttgtgtttggatgtgagctacgtttaaaaatttcttgtggtattatgatcaatgctgccccggatattgggccacttttctcagcaagcatgctcttgtgtgcagAGGTCTTGTACCGCTTTTGGCGGAAGGCTCAGCAAAGGCCACCGATTCAGAGTCAACAGATGATATCTTAAATGCTGCTATTGGATACGCACTGAAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT