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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttgggcgaagggcgctggtgtggttatgtcgtggggtgtatgcgatgaaggtcgggaggagtgacggattgtttttggtggtgggaatgtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCGGAGGGCAGGACTGCGTTGCACTTCGCGTGCGGTTATGGAGAG

Basic information

species Physcomitrella patens
transcript PP1S8_3V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162168258|gb|FC344988.1|FC344988
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162203208|gb|FC379305.1|FC379305
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162201915|gb|FC376913.1|FC376913
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|100399907|gb|BY990681.1|BY990681
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACNGGTGACGTGGAG                         GGTCTGAAAATTCT
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCT
EST: gi|208366136|gb|DC955237.1|DC955237
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162183993|gb|FC359363.1|FC359363
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208363169|gb|DC954355.1|DC954355
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|18338707|gb|BJ170731.1|BJ170731
EST:     GACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: GACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208380189|gb|DC927468.1|DC927468
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208383022|gb|DC927772.1|DC927772
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGGCGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162165655|gb|FC341494.1|FC341494
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162156693|gb|FC333549.1|FC333549
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162216293|gb|FC392086.1|FC392086
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162228872|gb|FC404184.1|FC404184
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208360463|gb|DC930816.1|DC930816
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162157915|gb|FC334901.1|FC334901
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162170009|gb|FC345062.1|FC345062
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162174547|gb|FC350202.1|FC350202
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|100399617|gb|BY972808.1|BY972808
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208375183|gb|DC945333.1|DC945333
EST:     GATGAATTGACCGTACATCACACCGCCAGCACCNGTGACGTGGAG                         GGTCTGAAANTT-TTTTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: GATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208368948|gb|DC947506.1|DC947506
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208396385|gb|DC920065.1|DC920065
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208356212|gb|DC957330.1|DC957330
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162275865|gb|FC451426.1|FC451426
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162210973|gb|FC387071.1|FC387071
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162155861|gb|FC332410.1|FC332410
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208369839|gb|DC951928.1|DC951928
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67700007|gb|BJ960240.1|BJ960240
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162209197|gb|FC385416.1|FC385416
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208395328|gb|DC919932.1|DC919932
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162192826|gb|FC369651.1|FC369651
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162151736|gb|FC328593.1|FC328593
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGANAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208358799|gb|DC957627.1|DC957627
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162192827|gb|FC369652.1|FC369652
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208386947|gb|DC956930.1|DC956930
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208374895|gb|DC956168.1|DC956168
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162187054|gb|FC362836.1|FC362836
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162193266|gb|FC371534.1|FC371534
EST:     GTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: GTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162277694|gb|FC453533.1|FC453533
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208372469|gb|DC948723.1|DC948723
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTNTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162153901|gb|FC329408.1|FC329408
EST:     AAGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCA
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCA
EST: gi|162176549|gb|FC353018.1|FC353018
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67695701|gb|BJ955934.1|BJ955934
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162183188|gb|FC360143.1|FC360143
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162201347|gb|FC376865.1|FC376865
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162247198|gb|FC420240.1|FC420240
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162165654|gb|FC341493.1|FC341493
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162155860|gb|FC332409.1|FC332409
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208349589|gb|DC922007.1|DC922007
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162249083|gb|FC421504.1|FC421504
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208388687|gb|DC953449.1|DC953449
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162189806|gb|FC366055.1|FC366055
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGAC
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGAC
EST: gi|162200980|gb|FC377383.1|FC377383
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67693149|gb|BJ953382.1|BJ953382
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208392744|gb|DC953641.1|DC953641
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAACTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|37828562|gb|BJ586574.1|BJ586574
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162174546|gb|FC350201.1|FC350201
EST:     GGACGATGAATTGACCGTACATCACA-CGCCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTC-TCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: GGACGATGAATTGACCGTACATCACACCG-CCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|100390591|gb|BY971346.1|BY971346
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162209196|gb|FC385415.1|FC385415
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67725494|gb|BJ975753.1|BJ975753
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162217092|gb|FC393392.1|FC393392
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208394790|gb|DC924093.1|DC924093
EST:     CGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTNGAG                         GGTCTGAAAATTCTTTTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: CGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67726133|gb|BJ976392.1|BJ976392
EST:     AGGACGATGAATTGACCGTACATCACATCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162152255|gb|FC328234.1|FC328234
EST:     AGCACCGGTGACGTGGAG                         GGTGTG-AAATTCTTCTTCGAGACGGTGCAGACATGGACGAGAAGGATGCG
genomic: AGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162152256|gb|FC328235.1|FC328235
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGC
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGC
EST: gi|67724385|gb|BJ974644.1|BJ974644
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67724791|gb|BJ975050.1|BJ975050
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208348275|gb|DC916960.1|DC916960
EST:     CCAGCACCGGTGACGTGGA-                         GGTCTGAAAATTCTTNTACGAGACCGTGCAGACAAGGACGAGAAGGATGCG
genomic: CCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208399422|gb|DC924852.1|DC924852
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GNTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208369762|gb|DC947958.1|DC947958
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67727517|gb|BJ977776.1|BJ977776
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCAGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67697628|gb|BJ957861.1|BJ957861
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208373680|gb|DC952505.1|DC952505
EST:     AGGGCGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162170008|gb|FC345061.1|FC345061
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208367933|gb|DC955368.1|DC955368
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162173754|gb|FC349930.1|FC349930
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTTTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162201348|gb|FC376866.1|FC376866
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162157916|gb|FC334902.1|FC334902
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|18334175|gb|BJ166191.1|BJ166191
EST:     ACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: ACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|208358598|gb|DC946559.1|DC946559
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|162173755|gb|FC349931.1|FC349931
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
EST: gi|67727208|gb|BJ977467.1|BJ977467
EST:     AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAG                         GGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG
genomic: AGGACGATGAATTGACCGTACATCACACCGCCAGCACCGGTGACGTGGAGgtattggggg ... gtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgaaggtcgggaggagtgacggattgtttttggtggtgggaatgtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCGGAGGGCAGGACTGCGTTGCACTTCGCGTGCGGTTATGGAGAG
                        attgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttgggcgaagggcgctggtgtggttatgtcgtggggtgtatgcgatgaaggtcgggaggagtgacggattgtttttggtggtgggaatgtgtgggcagGGTCTGAAAATTCTTCTACGAGACGGTGCAGACAAGGACGAGAAGGATGCGGAGGGCAGGACTGCGTTGCACTTCGCGTGCGGTTATGGAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA