1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gccctttgcttcagatgggttttgtcaatgagatttctcattttcatgatgcgatttgtttgcacaaggtggctaaataccatttgtgtgagtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGAGAGTCAACGGTAGTGACATACGACCATG
species | Physcomitrella patens |
transcript | PP1S89_217V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGEST: gi|208380398|gb|DC907723.1|DC907723
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGEST: gi|67578479|gb|BJ950646.1|BJ950646
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGEST: gi|100421646|gb|BY976247.1|BY976247
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAEST: gi|208379652|gb|DC903707.1|DC903707
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGA
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGEST: gi|100444813|gb|BY982641.1|BY982641
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
EST: ACAAAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCCAGTATACCAG GCTTGGTTATTGTTTTTCTACEST: gi|208371674|gb|DC932503.1|DC932503
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTAC
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTANCACTGCGGGAAAATATTTTGEST: gi|208351804|gb|DC910358.1|DC910358
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGEST: gi|208363415|gb|DC947013.1|DC947013
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
EST: AATATGGAATGGATGCTTTCCAGC-TTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGEST: gi|100445691|gb|CJ969990.1|CJ969990
genomic: AATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
EST: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAG GCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
genomic: ACAGAATATGGAATGGATGCTTTCCAGCTTTGCCAGTCCAAGTATACCAGgtaactatat ... agtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTG
atgatgcgatttgtttgcacaaggtggctaaataccatttgtgtgagtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGAGAGTCAACGGTAGTGACATACGACCATG
ggctaaa putative branch site (score: 4)
atttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctttgcttcagatgggttttgtcaatgagatttctcattttcatgatgcgatttgtttgcacaaggtggctaaataccatttgtgtgagtacctcagGCTTGGTTATTGTTTTTCTACACTAGTTTAGCACTGCGGGAAAATATTTTGAGAGTCAACGGTAGTGACATACGACCATG
- - - tgcttca
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