1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcaggcttcatagtgtaggttggcatgggtacgtgagtgcaaagaatgtcatgagctaatgtactggagtcctgtcctgagccttccctctttttgcagGTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCTGGTCTTTCGGGCCAAGGAGCGGGGGCAGGG
species | Physcomitrella patens |
transcript | PP1S81_162V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG GTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCTEST: gi|162174148|gb|FC350351.1|FC350351
genomic: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAGgtagttctct ... ctttttgcagGTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCT
EST: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG GTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCTEST: gi|100418283|gb|BY993423.1|BY993423
genomic: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAGgtagttctct ... ctttttgcagGTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCT
EST: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG GTGTTATCTGATGATGAANAAAGATCAATTTACGACCGTTTTGGTGAAGCTEST: gi|208378657|gb|DC903688.1|DC903688
genomic: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAGgtagttctct ... ctttttgcagGTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCT
EST: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAG GTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCT
genomic: AGATGCTGGTGCAGAACAAAAATTTAAGGACATCAGTAATGCATACGAGgtagttctct ... ctttttgcagGTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCT
aatgtcatgagctaatgtactggagtcctgtcctgagccttccctctttttgcagGTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCTGGTCTTTCGGGCCAAGGAGCGGGGGCAGGG
agctaat putative branch site (score: 3)
tcctgagccttccctc putative PPT
taatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaggcttcatagtgtaggttggcatgggtacgtgagtgcaaagaatgtcatgagctaatgtactggagtcctgtcctgagccttccctctttttgcagGTGTTATCTGATGATGAAAAAAGATCAATTTACGACCGTTTTGGTGAAGCTGGTCTTTCGGGCCAAGGAGCGGGGGCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG