1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtccgtgacatcttcctgtttattcattttctattgtttagatgtttttgatgccgttgcataccagtggaagccaaagttatatccctttaaaatcatgcttaaatttttctttgaattttgcagGGTCACTGCGGATCATGCTGGGCTTTTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA
species | Physcomitrella patens |
transcript | PP1S7_406V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGCTTGAGCCTGAGCTACTTGGAAACAACAGACTCATCCATCAGEST: gi|67570161|gb|BJ942985.1|BJ942985
genomic: AGGCTTGAGCCTGAGCTACTTGGAAACAACAGACTCATCCATCAG
EST: AGGCTTGAGCCTGAGCTACTTGGAAACAACAGACTCATCCATCAGEST: gi|162171829|gb|FC348979.1|FC348979
genomic: AGGCTTGAGCCTGAGCTACTTGGAAACAACAGACTCATCCATCAG
EST: CTCATTTCGGACCGAATCCAGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTCGAGCTTGCTGTEST: gi|208377375|gb|DC906644.1|DC906644
genomic: CTCATTTCGGACCGAATCCAGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
EST: AGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGTEST: gi|162195749|gb|FC371140.1|FC371140
genomic: AGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
EST: TTGGTGACATTCTAGATCAGEST: gi|100425949|gb|BY977201.1|BY977201
genomic: TTGGTGACATTCTAGATCAG
EST: ATACCTCATTTCGGACCGAATCCAGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGTEST: gi|100371973|gb|BY967643.1|BY967643
genomic: ATACCTCATTTCGGACCGAATCCAGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
EST: AGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGTEST: gi|162162644|gb|FC338946.1|FC338946
genomic: AGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
EST: ATACCTCATTTCGGACCGAATCCAGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTCGAGCTTGCTGTEST: gi|208397325|gb|DC908229.1|DC908229
genomic: ATACCTCATTTCGGACCGAATCCAGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
EST: AGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGTEST: gi|18373041|gb|BJ204643.1|BJ204643
genomic: AGTTTGCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
EST: GCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
genomic: GCAGTTTCTGAGATCAGAGATCAGAGCAGATCGGCACGGAGGGGAGAGACCAACCATGGCGTATGAGAGGATGGGGAAGCTGGATTTGAGCTTGCTGT
agccaaagttatatccctttaaaatcatgcttaaatttttctttgaattttgcagGGTCACTGCGGATCATGCTGGGCTTTTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA
tttaaaatcatgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtgacatcttcctgtttattcattttctattgtttagatgtttttgatgccgttgcataccagtggaagccaaagttatatccctttaaaatcatgcttaaatttttctttgaattttgcagGGTCACTGCGGATCATGCTGGGCTTTTGGGGCTGTTGAGTCACTGACTGATCGTTTCTGCATTCACTTGAATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT