1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatcatattgtacctgtttgtttcttttggtctgtttctcttcaatcttcgtcgagttcaatatgcgttttggatcctcaaatacaattagtgttctcagGTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG
species | Physcomitrella patens |
transcript | PP1S7_156V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTCACAAGTGAGATATGTGCTCCTTTGGTTGCTACTCTTCCACTTGAG GTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTEST: gi|208379626|gb|DC927123.1|DC927123
genomic: CTCTCACAAGTGAGATATGTGCTCCTTTGGTTGCTACTCTTCCACTTGAGgtaatagttc ... gtgttctcagGTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGT
EST: CTCTCACAAGTGAGATATGTGCTCCTTTGGTTGCTACTCTTCCACTTGAG GTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTEST: gi|208384409|gb|DC928160.1|DC928160
genomic: CTCTCACAAGTGAGATATGTGCTCCTTTGGTTGCTACTCTTCCACTTGAGgtaatagttc ... gtgttctcagGTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGT
EST: CTCTCACAAGTGAGATATGTGCTCCTTTGGTTGCTACTCTTCCACTTGAG GTCCGACCCAAGATAGAGGAGTTCCTCAAGGGGTGTCTTCATTGTCTTCAGEST: gi|208379943|gb|DC927669.1|DC927669
genomic: CTCTCACAAGTGAGATATGTGCTCCTTTGGTTGCTACTCTTCCACTTGAGgtaatagttc ... gtgttctcagGTCCGACCCAAGATAGAGGAGTTCCTCAA-GGGTGTCTTCATTGTCTTCAG
EST: CTCTCACAAGTGAGATATGTGCTCC-TTNGNTGCTACTCTTCCACTTGAG GTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGT
genomic: CTCTCACAAGTGAGATATGTGCTCCTTTGGTTGCTACTCTTCCACTTGAGgtaatagttc ... gtgttctcagGTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGT
tcttcgtcgagttcaatatgcgttttggatcctcaaatacaattagtgttctcagGTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG
tgttctc CT-rich tract
aaatacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcatattgtacctgtttgtttcttttggtctgtttctcttcaatcttcgtcgagttcaatatgcgttttggatcctcaaatacaattagtgttctcagGTCCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG