1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtaatcaacttgaagtctattttaactgtgatacacatatgcaatgattttacattcatcttcattttggggtgtttcgatcggagactggcacattgctggctgaatcctcttggacataaagttcatgtaatctcgacctggtttaagtgaatgggggttgatagagtttgaattttcggtgttggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTGGCGATGGTTGTGACGGTGGGTACCCCATCAGAGCCTGGCGATACTTCA
species | Physcomitrella patens |
transcript | PP1S79_128V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|100394861|gb|BY989962.1|BY989962
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|18331434|gb|BJ163445.1|BJ163445
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|100396641|gb|BY990226.1|BY990226
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|100383576|gb|BY950360.1|BY950360
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|100369727|gb|BY967362.1|BY967362
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGNCG-ATTTGAGTGEST: gi|100383471|gb|BY950255.1|BY950255
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTG-CGGATTTGAGTG
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|100382602|gb|BY986877.1|BY986877
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|208371635|gb|DC932464.1|DC932464
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTEST: gi|208363376|gb|DC946974.1|DC946974
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
EST: TTGGAGCAGCGGAATCATTGANTGATCGCTTNTGCATTCACATGAATGAG AGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
genomic: TTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAGgtaagtaatc ... ggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGT
tggtttaagtgaatgggggttgatagagtttgaattttcggtgttggtgaatcagAGTGTGTCACTATCAGAGAACGATCTCCTAGCCTGCTGCGGATTTGAGTGTGGCGATGGTTGTGACGGTGGGTACCCCATCAGAGCCTGGCGATACTTCA
ggttgat putative branch site (score: 2)
tttgaatttt TA-rich tract