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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactactcttcctaatgctgtaagggcagtgatagggtagctgtgctgaatctttcagtcaagacatacttcgtctttgtggcatcaccacctcgtatctttgtaaatcgttttcacttgcttgctcgatttctgctttttgtccttaggatatacatctcctatttttctctaaaattttggtttctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATCTCTTCTGCACAGTTTTTTGGTGATCAATATAAAAACAATGATCAGGGAA

Basic information

species Physcomitrella patens
transcript PP1S795_4V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208370166|gb|DC951765.1|DC951765
EST:     GGACGNGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGGAAATTTGCCAATGCCAAATCCAT
genomic: GGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAA-GAAATTTGCCAATGCCAAATCCAT
EST: gi|208368245|gb|DC951511.1|DC951511
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|208358641|gb|DC949976.1|DC949976
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|67696742|gb|BJ956975.1|BJ956975
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|208396541|gb|DC915853.1|DC915853
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|162221477|gb|FC397286.1|FC397286
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|67720059|gb|BJ970318.1|BJ970318
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|208362683|gb|DC947174.1|DC947174
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|162200943|gb|FC377346.1|FC377346
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|67698195|gb|BJ958428.1|BJ958428
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|18334153|gb|BJ166169.1|BJ166169
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|162194335|gb|FC368518.1|FC368518
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|37830194|gb|BJ588206.1|BJ588206
EST:     GAGGGTCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|18335952|gb|BJ167973.1|BJ167973
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
EST: gi|37823009|gb|BJ581075.1|BJ581075
EST:     GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAG                         GTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC
genomic: GAGGATCTCCTGTCAAGTCCTCATTCAACAGTGGACGTGCCAAGACACAGgtacactact ... ctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccttaggatatacatctcctatttttctctaaaattttggtttctgattgcagGTTGACGACAGCCATGAGGCACAAAAGAAATTTGCCAATGCCAAATCCATCTCTTCTGCACAGTTTTTTGGTGATCAATATAAAAACAATGATCAGGGAA
                                           ttctgat  putative branch site (score: 3)
                                          tttct  CT-rich tract
                     tatttttctctaaaat  TA-rich tract