1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctattaattttaaacaataaaatttagtctctgcaaattttggtctgaactctatgactggtacgaaatggcagttcatgtggattttttttatctgcagACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAATGTTTGCATTATTTGTCCCTTTCTTCTTCGACATCCCAATTTCCACCCG
species | Physcomitrella patens |
transcript | PP1S78_54V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CA-TAATCTCGACAACCCTTTGA-GTGATCGCACTGGCTGCCTTTACA-G ACCNNACATCTTTGACAGGAAATCTCTT-GACACCTGGGCCTTATGGCTEST: gi|208346567|gb|DC916833.1|DC916833
genomic: CAATAATCTCGACAACCCTT-GAAGTGATCGCACTGGCTGCCTT-ACAAGgtacccaaga ... ttatctgcagACCCAACATCTTTGACAGGAA-TCTCTTTGACACCTGGGCCTTATGGCT
EST: AACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAG ACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAAEST: gi|37851035|gb|BJ609043.1|BJ609043
genomic: AACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAGgtacccaaga ... ttatctgcagACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAA
EST: AACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAG ACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAAEST: gi|37842140|gb|BJ600148.1|BJ600148
genomic: AACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAGgtacccaaga ... ttatctgcagACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAA
EST: AACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAG ACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAA
genomic: AACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAGgtacccaaga ... ttatctgcagACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAA
tgaactctatgactggtacgaaatggcagttcatgtggattttttttatctgcagACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAATGTTTGCATTATTTGTCCCTTTCTTCTTCGACATCCCAATTTCCACCCG
ttttttttatctgc CT-rich tract
attttttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattaattttaaacaataaaatttagtctctgcaaattttggtctgaactctatgactggtacgaaatggcagttcatgtggattttttttatctgcagACCCAACATCTTTGACAGGAATCTCTTTGACACCTGGGCCTTATGGCTTAATGTTTGCATTATTTGTCCCTTTCTTCTTCGACATCCCAATTTCCACCCG
- - - - - - - - - - - - - - - ctgcaaa