1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcagccagcccttccctctcattttgtgatttcttttttaaagcctgcttttctgtggacattgttactgtaggatttgcaataaactgcactaatctcttcaagagcaacggttaccagtagttccaacgcttatttattgggcttctgaaatcttatggactaatatttctacctttttcttctccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTCGGGTATAGAGATTCTCTTCAATGTAAAAAATGAGATACTTTGGGAGAT
species | Physcomitrella patens |
transcript | PP1S78_33V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTEST: gi|162240059|gb|FC418823.1|FC418823
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTEST: gi|162240058|gb|FC418822.1|FC418822
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTEST: gi|37821556|gb|BJ579622.1|BJ579622
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTEST: gi|208381716|gb|DC928379.1|DC928379
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTEST: gi|18334929|gb|BJ166947.1|BJ166947
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTEST: gi|162256323|gb|FC432333.1|FC432333
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTEST: gi|15728433|gb|BI740785.1|BI740785
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGEST: gi|7287371|gb|AW599858.1|AW599858
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATG
EST: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAA AGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
genomic: TTGAAATTGGAAGCCGAGGTCCTCAAACTCCGCGAGGAAGCTGAAAAGAAgtgagcagcc ... ccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGT
gggcttctgaaatcttatggactaatatttctacctttttcttctccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTCGGGTATAGAGATTCTCTTCAATGTAAAAAATGAGATACTTTGGGAGAT
gactaat putative branch site (score: 11)
ctaatatttctacctt CT-rich tract
taatatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagccagcccttccctctcattttgtgatttcttttttaaagcctgcttttctgtggacattgttactgtaggatttgcaataaactgcactaatctcttcaagagcaacggttaccagtagttccaacgcttatttattgggcttctgaaatcttatggactaatatttctacctttttcttctccttttgcagAGGAATAGATCTTACTCAACCACCTCAGTAGGACAGTCAATGTCATGAAGTCGGGTATAGAGATTCTCTTCAATGTAAAAAATGAGATACTTTGGGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT