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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcaacgtccgtcctctttctagtttgttgattgttttggttaactctaataacctgcttttcaaagctccgacctcattcaaaaaaatgaaagctaattgaacttttcatgatcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCGAGTCAAGCACTGGATGACATTCAACGAGCCTCAGCAATTTTCTAATCTT

Basic information

species Physcomitrella patens
transcript PP1S76_8V6.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S76_8V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ18774 (Selaginella moellendorffii), 3'ss of exon 6
gtgagtttcaacgtccgtcctctttctagtttgttgattgttttggttaactctaataacctgcttttcaaagctccgacctcattcaaaaaaatgaaagctaattgaacttttcatgatcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCGAGTCAAGCACTGGATGACATTCAACGAGCCTCAGCAATTTTCTAATCTT
                                         |  ||  ||    |  || | ||||||         |  ||  | |  |    |||  ||    ||||                 |||||  | ||||||   || |||||||| || ||||| |||||||| || || || ||||||||||| || |||||||||||||  || || |||   || 
----------------------------------------gtgaggaaaaacaaagcaagcagcttttt--------gttcttttacggatttgtgacggcgggatgaat--------------gcagGAAACACTTTGCGGCTTATGCTGAGACATGCTTCGCGGCATTCGGAGACCGCGTGAAGCACTGGATAACCTTCAACGAGCCTCTTCAGTTCTCTGTGCTG

upper sequence: PP1S76_8V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ11470 (Selaginella moellendorffii), 3'ss of exon 5
gtgagtttcaacgtccgtcctctttctagtttgttgattgttttggttaactctaataacctgcttttcaaagctccgacctcattcaaaaaaatgaaagctaattgaacttttcatgatcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCGAGTCAAGCACTGGATGACATTCAACGAGCCTCAGCAATTTTCTAATCTT
                             ||  ||    |  | |   | |    | | | ||      ||| |   |    ||                |  |||        |  ||| |    |||||  | ||||||  ||| |||||||| || ||||| |||||||| ||||| || ||||||||||| || |||||||||||||  || ||||||   || 
----------------------------attcttttgggggatggacgagccaagaaatcgtgtgaggaaaaacaaagcaagcagctttttgttcttttacggatttgtgacggcgggatgaatgcagGAAACACTTTGCGGCGTATGCTGAGACATGCTTCGCGGCATTCGGAGATCGCGTGAAGCACTGGATAACCTTCAACGAGCCTCTTCAGTTTTCTGTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377393|gb|DC906648.1|DC906648
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100412613|gb|BY974821.1|BY974821
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162249661|gb|FC426801.1|FC426801
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100393326|gb|BY989824.1|BY989824
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100375234|gb|BY948810.1|BY948810
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100396545|gb|BY990178.1|BY990178
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100432068|gb|BY978649.1|BY978649
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|67716232|gb|BJ966492.1|BJ966492
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|208383670|gb|DC907061.1|DC907061
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATNGACCGCAGANTTGT                         GAATGATTTTGCGTTGTACGCTGANANT-GTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100362831|gb|BY947550.1|BY947550
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100391024|gb|BY953034.1|BY953034
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162183972|gb|FC359342.1|FC359342
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100387996|gb|BY988469.1|BY988469
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162154400|gb|FC330207.1|FC330207
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100445704|gb|CJ970003.1|CJ970003
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162258357|gb|FC434284.1|FC434284
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100358802|gb|BY946698.1|BY946698
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|162157552|gb|FC333810.1|FC333810
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100437296|gb|BY961449.1|BY961449
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100452031|gb|CJ975065.1|CJ975065
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCTATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|67719020|gb|BJ969279.1|BJ969279
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100376261|gb|BY986100.1|BY986100
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|208380336|gb|DC907661.1|DC907661
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGTTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100417188|gb|BY957211.1|BY957211
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|67718927|gb|BJ969186.1|BJ969186
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCANAGTTGT                         GAATGATTTTGCGTTGTACGCTGANACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100418352|gb|BY957377.1|BY957377
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
EST: gi|100365284|gb|BY966902.1|BY966902
EST:     CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT                         GAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG
genomic: CCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGTgtgagtttca ... atcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccgacctcattcaaaaaaatgaaagctaattgaacttttcatgatcatgatagGAATGATTTTGCGTTGTACGCTGAGACTTGTTTCGCTGCATTCGGCGATCGAGTCAAGCACTGGATGACATTCAACGAGCCTCAGCAATTTTCTAATCTT
                         agctaat  putative branch site (score: 3)
          attcaaaaaaatgaaa  TA-rich tract